Table of Contents

NOTE: This manual is ancient and obsolete!
Current PyMOL subscribers can access updated online documentation.

• Copyright
• Terms of Usage for the PyMOL Reference Manual
• Trademarks

• accept
• alias
• align
• alt_special
• alter
• alter_state
• attach
• backward
• bg_color
• bond
• button
• cartoon
• cd
• center
• clip
• cls
• color
• commands
• copy
• count_atoms
• count_frames
• count_states
• create
• ctrl_special
• cycle_valence
• decline
• delete
• deprotect
• deselect
• disable
• distance
• do
• dss
• dummy
• edit
• enable
• ending
• extend
• feedback
• find_pairs
• fit
• flag
• forward
• fragment
• frame
• full_screen
• fuse
• get_area
• get_chains
• get_dihedral
• get_extent
• get_frame
• get_model
• get_names
• get_pdbstr
• get_povray
• get_state
• get_symmetry
• get_title
• get_type
• get_view
• h_add
• h_fill
• help
• hide
• id_atom
• identify
• index
• indicate
• intra_fit
• intra_rms
• intra_rms_cur
• invert
• isodot
• isolevel
• isomesh
• isosurface
• iterate
• iterate_state
• keyword
• label
• load
• load_brick
• load_callback
• load_cgo
• load_map
• load_model
• load_object
• load_traj
• ls
• map_double
• map_new
• map_set_border
• mappend
• mask
• mclear
• mdo
• mdump
• mem
• meter_reset
• middle
• mmatrix
• move
• mplay
• mpng
• mset
• mstop
• orient
• origin
• pair_fit
• png
• protect
• push_undo
• pwd
• quit
• ray
• read_mmodstr
• read_molstr
• read_pdbstr
• read_xplorstr
• rebuild
• recolor
• redo
• refresh
• reinitialize
• remove
• remove_picked
• rename
• replace
• reset
• rewind
• rms
• rms_cur
• rock
• rotate
• save
• scene
• sculpt_activate
• sculpt_deactivate
• sculpt_iterate
• sculpt_purge
• select
• set
• set_color
• set_geometry
• set_key
• set_symmetry
• set_title
• set_view
• shft_special
• show
• smooth
• sort
• space
• spectrum
• spheroid
• splash
• split_states
• stereo
• symexp
• sync
• system
• torsion
• transform_selection
• translate
• turn
• unbond
• undo
• unmask
• unpick
• unset
• update
• view
• viewport
• wizard
• zoom